Dear list,
I have two questions regarding Human Gene 1.0 ST arrays:

    * Both NUSE and RLE plots need a fitted object using fitPLM
      function. Now, this function accepts raw data from a set of Hu
      Gene 1.0 arrays, but, internally, this function performs a RMA
      normalization. What level is used for this normalization? I cannot
      choose the level (i.e. core, full, extended) for the "internal"
      normalization.
    * Are a splicing analysis using Hu Gene 1.0 arrays (core analysis)
      and a splicing analysis using Hu Exon 1.0 arrays (core analysis)
      equivalent in terms of results?


Thanks,
Javier


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