Hi group,
I have a basic question regarding the qvalue package.The fuction qvalue for
the given pvalues generates qvalue.If I am interested in getting the pFDR is
it the same or do I have to give robust = TRUE for its generation.

>library(qvalue)

> p <- scan(“pvalues.txt”)

> qobj <- qvalue(p,robust=TRUE)

> qwrite(qobj, filename=“myresults.txt”)

I am basically interested in getting the pFDR values from the pvalues that I
input.How do I get them using this package?

waiting for ur reply,

Thanks,

Viritha

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