Dear List,
I just istalled the R 2.13.0 and Bioconductor 2.8.  When loading the latest
arrayQualityMetrics package it failed because there was no 'affyPLM'
package.  I then re-installed 'affyPLM' but received the message "package
‘affyPLM’ is not available (for R version 2.13.0)".  I seeing some of the
discussion recently on new features in arrayQualityMetrics, I am looking
forward to checking them out. The error messages and sessionInfo are pasted
below.
Thanks for any assistance!
Eric

Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) :
  there is no package called 'affyPLM'
Error: package/namespace load failed for 'arrayQualityMetrics'
> utils:::menuInstallPkgs()
Error in install.packages(NULL, .libPaths()[1L], dependencies = NA, type =
type) :
  no packages were specified
> utils:::menuInstallPkgs()
Error in install.packages(NULL, .libPaths()[1L], dependencies = NA, type =
type) :
  no packages were specified
> biocLite("affyPLM")
Using R version 2.13.0, biocinstall version 2.8.3.
Installing Bioconductor version 2.8 packages:
[1] "affyPLM"
Please wait...

Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
  package ‘affyPLM’ is not available (for R version 2.13.0)
>


> sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: i386-pc-mingw32/i386 (32-bit)

locale:
[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United
States.1252
[3] LC_MONETARY=English_United States.1252
LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] affy_1.30.0    Biobase_2.12.0

loaded via a namespace (and not attached):
[1] affyio_1.20.0         preprocessCore_1.14.0 tools_2.13.0


-- 
Eric Bremer, PhD
Chief Scientific Officer
Precision Biomarker Resources, Inc.
820 Davis St.,  Suite 216
Evanston, Illinois  60201

Office: 847.866.0406
Mobile: 708.267.2052
Skype: egbremer

www.precisionbiomarker.com

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