Hi,

I've created a TranscriptDb object and would like to save it. I get an error that I'm unable to decode as shown below:

> saveFeatures(txdb,file="../txdb.sqlite")
Error in sqliteCopyDatabase(txdbConn(x), file) :
  RS-DBI driver: (database is locked)

Here's my sessionInfo() output:
> sessionInfo()
R version 2.11.0 (2010-04-22)
x86_64-redhat-linux-gnu

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8     LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8    LC_PAPER=en_US.UTF-8
 [8] LC_NAME=C                  LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] GenomicFeatures_1.0.10 Rsamtools_1.0.8        Biostrings_2.16.9      GenomicRanges_1.0.9    IRanges_1.6.17         data.table_1.5.3

loaded via a namespace (and not attached):
[1] Biobase_2.8.0     biomaRt_2.4.0     BSgenome_1.16.5   DBI_0.2-5         RCurl_1.4-3       RSQLite_0.9-2     rtracklayer_1.8.1 tools_2.11.0      XML_3.1-1
Could someone please help?

P. Kibet Korir
Bioinformatics (PhD Student),
NUI Galway
+353 86 224 19 66

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