Hi ,

I am looking to compare multiple libraries and not pairwise comparisons.
There are GLM functions in edgeR, are there similar functions in deseq as
well?

Thanks,
Shreyartha


On Fri, Apr 1, 2011 at 6:05 PM, Naomi Altman <naomi@stat.psu.edu> wrote:

> Do you mean most differentially expressed?  This is straight forward with
> either edgeR or DESeq.
>
> Naomi
>
>
> At 04:52 PM 4/1/2011, you wrote:
>
>> Hi,
>>
>> I have RNA-seq count data for 3 genotypes(3 replicates each) for the same
>> conditions. Is there a way to find most variable genes among all three?
>>
>>
>> Thanks,
>> Shreyartha
>>
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