Hi all,

I am trying to install libraries: "hgu133plus2hsentrezgprobe" and
"hgu133plus2hsentrezg.db".

I tried:
> biocLite("hgu133plus2hsentrezg.db")
Using R version 2.11.1, biocinstall version 2.6.9.
Installing Bioconductor version 2.6 packages:

But, get the error:
Error : package 'AnnotationDbi' 1.10.2 was found, but >= 1.12.0 is required
by 'hgu133plus2hsentrezg.db'

I tried updating 'AnnotationDbi'. But it seems this is the most up to date
version for R version 2.11.1, Bioconductor version 2.6.


So, I installed the most current version of R (2.12.2). Now, AnnotationDbi
is at the required version (1.12.0). But, when I go to install
'hgu133plus2hsentrezg.db':
> biocLite("hgu133plus2hsentrezgprobe")
Using R version 2.12.2, biocinstall version 2.7.4.
Installing Bioconductor version 2.7 packages:

I get the following error:
package ‘hgu133plus2hsentrezgprobe’ is not available


This seems like a catch-22. To get the required AnnotationDbi for
'hgu133plus2hsentrezg.db' I need to install a version of R/Bioconductor that
no longer contains the 'hgu133plus2hsentrezg.db'.

Any suggestions?

-- 
Obi L. Griffith, PhD
Post-doctoral fellow
Lawrence Berkeley Laboratory
Life Sciences Division, Cancer & DNA Damage Responses
One Cyclotron Rd.
Mailstop: 977-250
Berkeley, CA 94720
(510) 495-2841
www.obigriffith.org

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