Hi Raffaele
Thank you very much It was my fault (obviously...).I reinstalled the latest
version of affymetrix apt and everything works
Cheers
Guido
2011/3/29 rcaloger <raffaele.calogero@gmail.com>

> Message: 3
>> Date: Mon, 28 Mar 2011 14:36:28 +0200
>> From: Guido Leoni<guido.leoni@gmail.com>
>> To:<bioconductor@stat.math.ethz.ch>
>> Subject: [BioC] Problem with oneChannelGUI
>> Message-ID:
>>        <AANLkTinEThedN0tr41Q2mvA6j-PVUN9ShW2VGUox08HY@mail.gmail.com>
>> Content-Type: text/plain
>>
>
>  Dear List
>> I updated my R version to 2.12 and reinstalled all the oldest packages.
>> Now I'm trying to use oneChannelGUI in order to analyze some gene 1.0 St
>>  microarrays.
>> Every time I try to normalize my data with the apt of affymetrix I
>> retrieve
>> the following error
>>
>
>  apt-probeset-summarize: relocation error: /lib/libnss_files.so.2: symbol
>> __rawmemchr, version GLIBC_2.2.5 not defined in file libc.so.6 with link
>> time reference
>>
>> OnechannelGUI worked fine with R 2.10...
>> Please can someone give to me any suggestion?
>> thank you very much
>> Guido Leoni
>>
>
> Hi Guido,
> oneChannelGUI use the external installation of apt tools from affymetrix.
> The error you encountered it seems to be related to some problem with the
> version of apt tools you are using.
>
> have you reinstalled the apt tools?
> which version of apt-tools are you using?
>
> .... sorry for the stupid question....
> are you sure that you have installed the right version for your hardware?
>
> Could please execute the following commands in R and send me the output?
> sessionInfo()
> affylmGUIenvironment$aptDir
> affylmGUIenvironment$libDirLocation
>
> Cheers
> Raffaele
>
> --
>
> ----------------------------------------
> Prof. Raffaele A. Calogero
> Bioinformatics and Genomics Unit
> MBC Centro di Biotecnologie Molecolari
> Via Nizza 52, Torino 10126
> tel.   ++39 0116706457
> Fax    ++39 0116706487
> Mobile ++39 3333827080
> email: raffaele.calogero@unito.it
>       raffaele[dot]calogero[at]gmail[dot]com
> www:   http://www.bioinformatica.unito.it
>
>
>


-- 
Guido Leoni
National Research Institute on Food and Nutrition
(I.N.R.A.N.)
via Ardeatina 546
00178 Rome
Italy

tel     + 39 06 51 49 41 (operator)
        + 39 06 51 49 4498 (direct)

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