I remember this has been replied yesterday.

First, we recommend using "Sample Probe Profile.txt" instead of "Group Probe
Profile.txt". "Group Probe Profile.txt" may still work depending on how the
group is defined. To avoid trouble, just use "Sample Probe Profile.txt".

As for nuID conversion, there are two choices:
1. Set the "convertNuID" parameter as FALSE. In this case, no nuID
conversion will be performed.
2. Provide the id mapping package for nuID conversion. For example, if you
are using human chips, then set "lib.mapping=lumiHumanIDMapping".

BTW, when you report problem, please always attach the sessionInfo() and
error message.

Pan


Date: Tue, 22 Mar 2011 17:13:16 -0400
From: kripa raman <kripa.raman7@gmail.com>
To: bioconductor@r-project.org
Subject: [BioC] lumi batch from genomestudio
Message-ID:
       <AANLkTinspoy=NNvCOu6m7Of+
T8HfPeSPz8Fz=1DUcHoS@mail.gmail.com>
Content-Type: text/plain

Hi everyone!

I've just obtained data from illumina HT12 chips and have taken a
preliminary look at the data in genomestudio. I'd like to do further
analysis in R but I'm having trouble creating the batch file. I've exported
the Group_Probe_Profile.txt sheet but when using this I get errors regarding
lack of nuID and such. Does anyone have familiarity with doing this; are
there other files I'm missing?
Some guidance would be greatly appreciated!

Thanks,

Kripa

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