Hi Rupert, 

I've recently developed an R package that among other things can generate miRNA-target mRNA lists using the source files downloaded from miRGen website. Currently, the CADMIM package is available on www.maths.usyd.edu.au/u/vivek.

Regards,
Vivek
Message: 22
Date: Tue, 15 Mar 2011
 09:48:54 +0100
From: "James F. Reid" <james.reid@ifom-ieo-campus.it>
To: Ruppert Valentino <ruppert7@hotmail.com>
Cc: BioC <bioconductor@stat.math.ethz.ch>
Subject: Re: [BioC] How do I parse HTML table using RCurl?
Message-ID: <4D7F27F6.70505@ifom-ieo-campus.it>
Content-Type: text/plain; charset="ISO-8859-1"; format=flowed

Hi Ruppert,


On 03/14/2011 11:35 PM, Ruppert Valentino wrote:
>
> Hi James,
>
> Many thanks for telling me that target scan is accessible via AnnotationDbi as this will help me to solve the problem in a different way as the others suggested.
>
> Can you tell me if bioconductor has resource to access miRanda http://www.microrna.org/microrna/ and pictar http://pictar.mdc-berlin.de/cgi-bin/PicTar_vertebrate.cgi
>
> If so, which library can I use?

No, I'm afraid these two resources are not available within 
bioconductor. The miranda-based predictions at microrna.org are 
available for download as tab delim txt. This is not the case for the 
pictar resource AFAIK, notice that this resource has not been updated 
since March 2007.

Best,
J.

>
>
> Many thanks
>
> Ruppert
>
>
>
> ----------------------------------------
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