*Dear Sir,

I want to use RWebServices package. I have already installed BioMart,
Biostrings, ChipPeakAnno, Iranges, Genomic features, MicroRNA, Limma, RJava,
TypeInfo,  But when i try to install the RWebServices it is asking to
install the SJava package.

But I find following error when I start to install SJava:
*
Using R version 2.11.1, biocinstall version 2.6.9.
Installing Bioconductor version 2.6 packages:
[1] "SJava"
Please wait...

Warning in install.packages(pkgs = pkgs, repos = repos, ...) :
  argument 'lib' is missing: using
'/home/student/R/i686-pc-linux-gnu-library/2.11'
trying URL '
http://www.bioconductor.org/packages/2.6/bioc/src/contrib/SJava_0.74.0.tar.gz
'
Content type 'application/x-gzip' length 2208965 bytes (2.1 Mb)
opened URL
==================================================
downloaded 2.1 Mb

* installing *source* package ‘SJava’ ...
checking shlib support in R... checking Java support in R... present:
interpreter : '/usr/bin/java'
archiver    : '/usr/bin/jar'
compiler    : '/usr/bin/javac'
header prep.: '/usr/bin/javah'
cpp flags   : ''
java libs   : '-L/usr/lib/jvm/java-6-openjdk/jre/lib/i386/server
-L/usr/lib/jvm/java-6-openjdk/jre/lib/i386
-L/usr/lib/jvm/java-6-openjdk/jre/../lib/i386 -L/usr/java/packages/lib/i386
-L/usr/lib/jni -L/lib -L/usr/lib -ljvm'
configure: error: One or more Java configuration variables are not set.
R was configured without full Java support (including JDK). Please run

  R CMD javareconf

as root to add Java support to R.  If you don't have root privileges,
run

  R CMD javareconf -e

to set all Java-related variables.
ERROR: configuration failed for package ‘SJava’
* removing ‘/home/student/R/i686-pc-linux-gnu-library/2.11/SJava’

The downloaded packages are in
    ‘/tmp/RtmpKKfFj5/downloaded_packages’
Warning message:
In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package 'SJava' had non-zero exit status



*Hence, Can you please suggest me a solution for this?*

* *

*Thanking you in anticipation.*

* *

*Regards,*

*Rayan*

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