Dear Mark,

I'm new to microarray data analysis but have a strong background in Biology.

I inherited a gene expression log2-transformed dataset produced in Illumina
(FinalReport_AVGSignal) and I was able to import it and quantile- normalize
it in Partek.  

As I have relatively few samples, I think that I should do the analysis with
Limma rather than t-test and ANOVA implemented in Partek.

Is there a simple way for me to import the normalized
"FinalReport_AVGSignal" file into beadarray, so that I can run Limma in it?
Thanks,

Gustavo

Gustavo Kijak,

Duke University

 


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