On Sun, Mar 13, 2011 at 1:17 PM, Gabriel Nathan Kaufman, Mr <
gabriel.kaufman@mail.mcgill.ca> wrote:

> I recently tried to install the bleeding-edge version of iFlow, and I think
> I am doing something wrong with one of its dependencies (console copied
> below). In short, I cannot seem to load flowCore properly, and the problem
> persists even when I try to re-install it from source. I have gone as far as
> completely re-installing R, Biobase, and flowCore - nothing seems to allow
> it to load. Any ideas?
>
>
>
I'm not sure exactly what is going on here. As a workaround, can you try
invoking R as follows?

R --arch i386

And let us know if that works.

Dan


>
> Thank you in advance for your time and attention.
>
> Gabriel Kaufman
> McGill University Complex Traits Group
>
>
> ---------------------------------------------------
>
>
> > library(iFlow)
> Loading required package: flowCore
> Loading required package: Biobase
>
> Welcome to Bioconductor
>
>  Vignettes contain introductory material. To view, type
>  'browseVignettes()'. To cite Bioconductor, see
>  'citation("Biobase")' and for packages 'citation(pkgname)'.
>
> Loading required package: rrcov
> Loading required package: robustbase
> Loading required package: pcaPP
> Loading required package: mvtnorm
> Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>  unable to load shared object
> '/Library/Frameworks/R.framework/Versions/2.13/Resources/library/graph/libs/x86_64/BioC_graph.so':
>  dlopen(/Library/Frameworks/R.framework/Versions/2.13/Resources/library/graph/libs/x86_64/BioC_graph.so,
> 6): Library not loaded:
> /Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libR.dylib
>  Referenced from:
> /Library/Frameworks/R.framework/Versions/2.13/Resources/library/graph/libs/x86_64/BioC_graph.so
>  Reason: image not found
> Error: package 'flowCore' could not be loaded
>
> > library(flowCore)
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>  unable to load shared object
> '/Library/Frameworks/R.framework/Versions/2.13/Resources/library/graph/libs/x86_64/BioC_graph.so':
>  dlopen(/Library/Frameworks/R.framework/Versions/2.13/Resources/library/graph/libs/x86_64/BioC_graph.so,
> 6): Library not loaded:
> /Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libR.dylib
>  Referenced from:
> /Library/Frameworks/R.framework/Versions/2.13/Resources/library/graph/libs/x86_64/BioC_graph.so
>  Reason: image not found
> Error: package/namespace load failed for 'flowCore'
>
> > sessionInfo()
> R version 2.13.0 Under development (unstable) (2011-03-13 r54760)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] en_CA.UTF-8/en_CA.UTF-8/C/C/en_CA.UTF-8/en_CA.UTF-8
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] rrcov_1.1-00     pcaPP_1.8-3      mvtnorm_0.9-96   robustbase_0.7-3
> Biobase_2.11.10
>
> loaded via a namespace (and not attached):
> [1] feature_1.2.6 ks_1.8.1      stats4_2.13.0 tools_2.13.0
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