Hi,
I am using RNA-seq data to identify the genes that are differentially
expressed. I have two groups (eg., F0 and P6) with two replicates (a and b)
for each group for the analysis. I was little confused which analysis to
use, either "Analysis using common dispersion" OR "Analysis using moderated
tagwise dispersions".
I was not sure as to what value to use for prior.n as I have two groups with
two replicates each. I would appreciate if you could help me in deciding the
method for analysis.

Thanks,
Sridhara


-- 
Sridhara G Kunjeti
PhD Candidate
University of Delaware
Department of Plant and Soil Science
email- sridhara@udel.edu
Ph: 832-566-0011

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