Dear Eichinger,
I would think topGO must do the job:
http://www.bioconductor.org/help/bioc-views/2.8/bioc/html/topGO.html
Yours,
Thao

On Thu, Feb 24, 2011 at 9:18 AM, Ludwig Eichinger <
ludwig.eichinger@uni-koeln.de> wrote:

> Dear colleagues,
>
> we would like to analyse gene ontology term enrichment for a RNAseq
> experiment of human cells. Can we do this with bioconductor (which R
> version do we need) and if yes, how can we do it?
>
> Thank you very much for your advice.
>
> Best regards
>
> Ludwig Eichinger
>
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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> Centre for Biochemistry
> Medical Faculty
> University of Cologne
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> D-50931 Koeln
>
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>
> Dictyostelium Genome Project and Fuctional Analysis:
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> http://www.uni-koeln.de/dictyostelium/
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>
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