Hi Samuel,
These are some of the ids for which I didnot get.
   IPI00055954 IPI00221338 IPI00465149 IPI00554793 IPI00028262 IPI00412977
IPI00105532 IPI00411514 IPI00746388 IPI00419266
Thanks,
Viritha

On Fri, Feb 18, 2011 at 2:49 AM, Samuel GRANJEAUD - IR/ICIM <
granjeau@tagc.univ-mrs.fr> wrote:

> Hi,
>
> Could you give us a list of 10 unmatched?
>
> BR
>
>
> viritha kaza wrote:
>
>> Hi
>> thanks for the reply:
>> As samuel suggested I used the following link
>> ftp://ftp.ebi.ac.uk/pub/databases/IPI/current/ipi.HUMAN.xrefs.gz.
>> For the once I didnot find,I used the following code
>>  Though I still dont get 1:1 mapping, I got the entrez and the gene
>> symbol.The ipi_test file contains the list of IPI that I want to convert.
>>  code:
>> >source('http://bioconductor.org/biocLite.R')
>> > biocLite("biomaRt")
>> >library("biomaRt")
>>  >ensembl = useMart("ensembl", dataset = "hsapiens_gene_ensembl")
>> >ipi=scan("ipi_test.txt",what =character(),sep='\n',quote="")
>> >getBM(attributes =
>> c("ipi","entrezgene","hgnc_symbol"),filters="ipi",values=ipi,mart = ensembl)
>> >write.table(ipi_entrez,"ipi_entrez_test.txt",sep='\t')
>>  I am still not getting a few.Is there any other method or should I think
>> that those IPI numbers dont have corresponding gene symbols?
>> Thanks,
>> Viritha
>>
>
> --
>
> Samuel GRANJEAUD                   granjeau@tagc.univ-mrs.fr
> INSERM - ICIM - TAGC               Tel: +33  (0)491 82 87 11/24
> http://tagc.univ-mrs.fr            Fax: +33  (0)491 82 87 01
> http://icim.marseille.inserm.fr/proteomique
>
>

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