Dear list,

I'm trying to use the AgiMicroRna package for miRNA microarray data
analysis, but I have problems with the RMA normalization step:

> ddTGS.rma = rmaMicroRna(dd.micro, normalize = TRUE, background = TRUE)

In fact, after this step I have noticed that ProbeNames are not matching the
right miR names.
This happens starting from both the dataset supplied as an example and my
own miRNA microarray data.

The match is correct when the Total Gene Signal protocol is run.

Does anyone have the same problem?
Thank you very much in advance

Paola

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