what do you think of Martin Krzywinski's visualizations ("hive plots") at
UBC?

http://mkweb.bcgsc.ca/linnet/img/assembly-quality.png

<http://mkweb.bcgsc.ca/linnet/img/assembly-quality.png>Are these orthogonal
to the sorts of plots typically generated for read depth coverage along a
chromosome/arm/region/locus, or useful as a replacement?  Subjectively, that
is.



On Thu, Feb 17, 2011 at 5:07 PM, Martin Morgan <mtmorgan@fhcrc.org> wrote:

> On 02/16/2011 03:08 PM, Adrian Johnson wrote:
> > hi :
> >
> > has any one tried to graphically represent coverage data from capture
> > sequencing on a chromosome. would you please share what packages you
> > used to represent coverage graphically.
>
> My own approach has been to write wrappers around lattice plotting
> functions, down-sampling using successiveIRanges for instance to capture
> the main features when getting a whole-genome view.
>
> In some respects it seems like the most insightful visualizations will
> not be of coverage per se but of derived statistics.
>
> Martin
>
> >
> > thanks
> > Adrian.
> >
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>
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