Hello all,

As part of my attempt to connect the Agilent/Illumina array packages with
their GPL IDs, I was wondering if someone could tell me how to get the
information on what the source file is for a package?   For example, I'd
like to know what the source file is for the package
'MmAgilentDesign026655.db' so that I can figure out if that corresponds to
the GEO GPL ID 11202 or not.

In addition, I have a mismatch in my data for a particular probe that one of
my researchers is interested in:

select * from agilent_probe where probe_id = 'A_51_P268529';
+-----------------------+--------------+-------------+-----------------+
| chip_id               | probe_id     | sequence_id | entrez_gene_eid |
+-----------------------+--------------+-------------+-----------------+
| mgug4121a             | A_51_P268529 | AF045741    |          13423  |
| MmAgilentDesign026655 | A_51_P268529 | NM_144942   |         246277  |
+-----------------------+--------------+-------------+-----------------+

I'm presuming that this is in the source file used to generate the
Bioconductor package, but I'd like to check that is the case.  What do
people usually do about mismatches like this?

Thanks,
Denise

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