Hi,
I am a PhD candidate at University of Delaware and area of research is
RNA-seq and functional genomics in Phytophthora phaseoli. I was impressed by
your paper in Genome Biology on "A scaling normalization method for
differential expression analysis of RNA-seq data". I did use the edgeR guide
and user manual and it makes lot of sense when the DGE in a plot graph.
If I am correct the DGE plot (Visualising DGE results) is plotted using the
normalized tag counts for each gene ID, please correct me if I am wrong?
If so, I was wondering if I can generate a list or table or gene ID with the
normalized tag counts? I would appreciate if you let me know if this can be
done.

Thanks,
Sridhara


-- 
Sridhara G Kunjeti
PhD Candidate
University of Delaware
Department of Plant and Soil Science
email- sridhara@udel.edu
Ph: 832-566-0011

	[[alternative HTML version deleted]]

