Hi all,

I wasn't sure whether I should have posted this on the list, but I think
we've discovered some odd behavior with topGO.

Given a set of the same (but differently ordered) list of uniprot id's, we
are getting different enrichment results. I wasn't sure whether the ordering
mattered. Or does the ordering hinge upon the ranking of the p-values? We
are just looking for GO enrichment in non-microarray studies, btw, so we've
faked the p-values (eg, 0.001) for the set of interesting genes.

Thanks,
Paul

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