On Mon, Jan 17, 2011 at 6:45 AM, Pedro Gomez-Fabre <pedro.fabre@gmail.com>wrote:

> Hi guys,
>
>
>
> I am trying to update bioconductor for an old release 2.10.1
>
>
>
> I have tried
>
>
>
> --------------------------
>
> BIO_R_Library <- .Library
> BIO_R_Downloads_Allowed <- TRUE
> source("http://bioconductor.org/biocLite.R")
> update.packages(repos=biocinstallRepos(), ask=FALSE)
>
> --------------------------
>
>
>
> The error I am getting is
>
> ========
>
> Warning: unable to access index for repository
> http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.10
>
> ========
>
>
>
> Looking at the url I could see the location is not available any longer.
>
>
>
> If I do a fresh installation of R and issue the same commands somehow it
> passed the missing repository and looks for the information at fhcrc.org.
>
>
>
> --------------------------
>
> Warning: unable to access index for repository
> http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.10
>
> also installing the dependencies 'multcomp', 'abind', 'miscTools', 'coin',
> 'zoo', 'strucchange', 'gam', 'lmtest', 'colorspace', 'robustbase'
>
>
>
> trying URL '
> http://cran.fhcrc.org/bin/windows/contrib/2.10/multcomp_1.2-3.zip'
>
> Content type 'application/zip' length 976410 bytes (953 Kb)
>
> opened URL
>
> ...
>
> --------------------------
>
>
>
> Issuing the same command again produce the error seen first.
>
>
>
> Do you know how I can select a valid location? Is there any way I can
> decide
> what server I have to be looking at? Alternatives?
>
>
>
>
Hi Pedro,

This is just a warning and can be safely ignored. Your packages should have
updated correctly. Email the list if that is not the case, and include the
output of sessionInfo().

Thanks,
Dan




> Thanks in advance for your help.
>
> Pedro
>
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>
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