Hi,

 

I need to install the mogene10stv1cdf package to analyze the mouse gene 1.0
ST array. I used the command specified on bioconductor page
(source("http://www.bioconductor.org/biocLite.R");
biocLite("mogene10stv1cdf");), but I got the following error message:

__________________________________________________________________

Running biocinstall version 2.3.14 with R version 2.8.0

Your version of R requires version 2.3 of Bioconductor.

Warning in install.packages(pkgs = pkgs, repos = repos, dependencies =
dependencies,  :

  argument 'lib' is missing: using '/usr/lib64/R/library'

Warning message:

In install.packages(pkgs = pkgs, repos = repos, dependencies = dependencies,
:

  Package mogene10stv1cdf is not available

__________________________________________________________________

 

Here is the sessionInfo:

> sessionInfo()

R version 2.8.0 (2008-10-20)

x86_64-redhat-linux-gnu

 

locale:

LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8
;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADD
RESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

 

attached base packages:

[1] splines   tools     stats     graphics  grDevices utils     datasets

[8] methods   base

 

other attached packages:

 [1] limma_2.16.5         simpleaffy_2.18.0    genefilter_1.22.0

 [4] survival_2.35-8      geneplotter_1.20.0   annotate_1.20.1

 [7] xtable_1.5-6         AnnotationDbi_1.4.3  lattice_0.17-15

[10] affyPLM_1.18.1       preprocessCore_1.4.0 gcrma_2.14.1

[13] matchprobes_1.14.1   affy_1.20.2          Biobase_2.2.2

 

loaded via a namespace (and not attached):

[1] affyio_1.10.1      DBI_0.2-5          grid_2.8.0
KernSmooth_2.23-3

[5] RColorBrewer_1.0-2 RSQLite_0.8-3

 

Thanks a lot!

 

Ming

 


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