Hi, Reema.

Try setting the download.file.method to curl:

options("download.file.method"="curl")

Sean
On Dec 13, 2010 8:20 AM, "Reema Singh" <reema28sep@gmail.com> wrote:
> Hi All
>
> I am using GEOquery package to convert the dataset into expression
set..But
> i m getting the following error.Here my script.
>
> library(Biobase)
> library(GEOquery)
> library(limma)
> gds <- getGEO(filename="/home/reemas/Desktop/GDS2821.soft.gz")
> eset <- GDS2eSet(gds,do.log2=TRUE)
>
> Error in download.file(myurl, destfile, mode = mode, quiet = TRUE) :
> cannot open URL '
> ftp://ftp.ncbi.nih.gov/pub/geo/DATA/annotation/platforms/GPL570.annot.gz'
>
> Internet connection is there on my machine,then why its not connecting to
> ftp..
>
> *
> REGRADS~
>
> Reema Singh
> *
>
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>
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