Hi, Reema.

Try setting the download.file.method to curl:

options("download.file.method"="curl")

Sean
On Dec 13, 2010 8:20 AM, "Reema Singh" <reema28sep@gmail.com> wrote:
> Hi All
>
> I am using GEOquery package to convert the dataset into expression
set..But
> i m getting the following error.Here my script.
>
> library(Biobase)
> library(GEOquery)
> library(limma)
> gds <- getGEO(filename="/home/reemas/Desktop/GDS2821.soft.gz")
> eset <- GDS2eSet(gds,do.log2=TRUE)
>
> Error in download.file(myurl, destfile, mode = mode, quiet = TRUE) :
> cannot open URL '
> ftp://ftp.ncbi.nih.gov/pub/geo/DATA/annotation/platforms/GPL570.annot.gz'
>
> Internet connection is there on my machine,then why its not connecting to
> ftp..
>
> *
> REGRADS~
>
> Reema Singh
> *
>
> [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor@r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
http://news.gmane.org/gmane.science.biology.informatics.conductor

	[[alternative HTML version deleted]]