Dear Colleagues:
 
I have problem in installing GLAD package. Please give us some advice.
 
--------------------- My step1 ------------------------------------------------ 
First, I installed gsl-1.7 locally : /mypath/bin/gsl-1.7


./configure –prefix=/mypath/bin/gsl-1.7
Make
Make install
 
-------------------My step2 --------------------------------------------
Second, I changed my .bash_profile as:
 
export PATH=/mypath/bin/gsl-1.7/bin:$PATH
export  LD_LIBRARY_PATH=/mypath/bin/gsl-1.7/lib
export GSL_LIB=/mypath/bin/gsl-1.7/lib
export GSL_INC=/mypath/bin/gsl-1.7/include
 
 
-----------------My step3 -------------------------------------------------
Third, I install GLAD package. I got the following  error message:
 
> source("http://bioconductor.org/biocLite.R")
BioC_mirror = 
http://www.bioconductor.org
Change using chooseBioCmirror().
> biocLite("GLAD")
Using R version 2.12.0, biocinstall version 2.7.4.
Installing Bioconductor version 2.7 packages:
[1] "GLAD"
Please wait...
 
trying URL 'http://www.bioconductor.org/packages/2.7/bioc/src/contrib/GLAD_2.12.0.tar.gz'
Content type 'application/x-gzip' length 1293485 bytes (1.2 Mb)
opened URL
==================================================
downloaded 1.2 Mb
 
* installing *source* package âGLADâ ...
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... no
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking for gsl-config... /usr/local/xiaosong/bin/gsl-1.7/bin/gsl-config
checking for GSL - version >= 1.6... yes
operating system: Linux
configure: creating ./config.status
config.status: creating src/Makevars
 
src/Makevars file
 
PKG_LIBS =  -lgsl -lgslcblas -lm
PKG_CPPFLAGS +=
 
** libs
g++ -I/usr/local/xiaosong/bin/R-2.12.0/include  -I/usr/local/include    -fpic  -g -O2 -c BkpInfo.cpp -o BkpInfo.o
g++ -I/usr/local/xiaosong/bin/R-2.12.0/include  -I/usr/local/include    -fpic  -g -O2 -c HaarSeg.cpp -o HaarSeg.o
HaarSeg.cpp:20:25: error: gsl/gsl_cdf.h: No such file or directory
HaarSeg.cpp: In function âdouble FDRThres(const double*, double, double, int)â:
HaarSeg.cpp:573: error: âgsl_cdf_gaussian_Pâ was not declared in this scope
make: *** [HaarSeg.o] Error 1
ERROR: compilation failed for package âGLADâ
* removing â/usr/local/xiaosong/bin/R-2.12.0/library/GLADâ
 
The downloaded packages are in
        â/tmp/RtmpbZT2rJ/downloaded_packagesâ
Updating HTML index of packages in '.Library'
Warning message:
In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package 'GLAD' had non-zero exit status



      
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