Hi,
thanks for all the help, I used to Affy powertools to get normalization
quickly using RMA
I tried mouse 1.0 CDF but affy didn't like it
I will work on a new pipeline using oligo

Any advice on how to do array quality metrics coming from oligo?

thanks again for all the help

Lucia


On Thu, Dec 2, 2010 at 6:11 AM, Pascal Gellert <pascal.gellert@mpi-bn.mpg.de
> wrote:

> Hi Lucia,
>
> as far as I know are the Mouse Gene 1.1 ST Array Plates identical to Mouse
> Gene  1.0 ST Cartridge Arrays. Meaning that you could use the 1.0 CDF file
> for the 1.1 Plate!? And these can be normalized with oligo as Mark
> suggested.
>
>
> Pascal
>
>
>
>
>
> On 01/-10/-28163 08:59 PM, Lucia Peixoto wrote:
>
>> Hi All,
>>
>> I just got all my data back from my experiment and I can't find the cdf
>> file
>> for the  Mouse Gene 1.1 ST Array anywhere
>> anyone knows how to get it or do I have to build it myself?
>> thanks for your help
>>
>> Lucia
>>
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>>
>>
>>
>

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