sessionInfo() 

R version 2.12.0 (2010-10-15)

Platform: i386-pc-mingw32/i386 (32-bit)

 

locale:

[1] LC_COLLATE=English_United Kingdom.1252 

[2] LC_CTYPE=English_United Kingdom.1252   

[3] LC_MONETARY=English_United Kingdom.1252

[4] LC_NUMERIC=C                           

[5] LC_TIME=English_United Kingdom.1252    

 

attached base packages:

[1] grid      stats     graphics  grDevices utils     datasets  methods


[8] base     

 

other attached packages:

[1] KEGGgraph_1.6.0  XML_3.2-0.2      Rgraphviz_1.28.0 graph_1.28.0    

 

loaded via a namespace (and not attached):

[1] tools_2.12.0

 

From: Jitao David Zhang [mailto:davidvonpku@gmail.com] 
Sent: 29 November 2010 16:40
To: Yan Jiao
Cc: bioconductor@r-project.org
Subject: Re: [BioC] KEGGgraph help

 


please report sessionInfo() results. Currently I have no clue. It might
be caused by corrupt graphviz, but I am not sure.


Best wishes,
David

2010/11/29 Yan Jiao <y.jiao@ucl.ac.uk>

Dear all,



I managed reading in a kegg graph



A graphNEL graph with directed edges

Number of Nodes = 70

Number of Edges = 109



but when I do plotKEGGgraph, R crashed, my R version is 2.12.0 , how can
I see the graph?



Many thanks



yan




**********************************************************************
This email and any files transmitted with it are
confide...{{dropped:10}}

_______________________________________________
Bioconductor mailing list
Bioconductor@r-project.org
https://stat.ethz.ch/mailman/listinfo/bioconductor
Search the archives:
http://news.gmane.org/gmane.science.biology.informatics.conductor




-- 
Jitao David Zhang
Pre-doc staff of Computational Biology and Biostatistics
Division of Molecular Genome Analysis
DKFZ, Heidelberg D-69120, Germany

http://www.NextBioMotif.com/


**********************************************************************
This email and any files transmitted with it are confide...{{dropped:10}}

