On Tue, Nov 23, 2010 at 7:55 AM, S T <elengss@gmail.com> wrote:

> Dear Sean,
>
> Thanks very much.
> I downloaded from there and installed it.
> However, the error message states
>
> > utils:::menuInstallLocal()
> package 'sva' successfully unpacked and MD5 sums checked
> > library(sva)
> Error: package 'sva' was built before R 2.10.0: please re-install it
>
>
You could ask the author to build the package for another version of R or
you could install from source.  In any case, it is probably best to contact
the author directly, as he may have thought of these situations already.

Sean



> Does this mean that I would have to use it on an older version of R (I'm
> currently using 2.11)?
>
> Thanks again.
>
> E.N.S
>
> On Tue, Nov 23, 2010 at 8:38 PM, Sean Davis <sdavis2@mail.nih.gov> wrote:
>
>>
>>
>> On Tue, Nov 23, 2010 at 7:07 AM, S T <elengss@gmail.com> wrote:
>>
>>> Dear users,
>>>
>>> I am having some trouble installing the SVA package for surrogate
>>> variable
>>> analysis
>>>
>>> > source("http://bioconductor.org/biocLite.R")
>>> BioC_mirror = http://www.bioconductor.org
>>> Change using chooseBioCmirror().
>>> > biocLite("sva")
>>> Using R version 2.11.1, biocinstall version 2.6.9.
>>> Installing Bioconductor version 2.6 packages:
>>> [1] "sva"
>>> Please wait...
>>>
>>> Warning message:
>>> In getDependencies(pkgs, dependencies, available, lib) :
>>>  package ‘sva’ is not available
>>>
>>> Can anyone help?
>>>
>>>
>> I do not think that sva is a bioconductor package and it is not available
>> via CRAN.  Therefore, biocLite() won't find it.  The URL appears to be:
>>
>> http://www.biostat.jhsph.edu/~jleek/sva/index.html
>>
>> Sean
>>
>>
>>> Thanks very much.
>>>
>>> E.N.S
>>>
>>>        [[alternative HTML version deleted]]
>>>
>>>
>>> _______________________________________________
>>> Bioconductor mailing list
>>> Bioconductor@stat.math.ethz.ch
>>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>>> Search the archives:
>>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>>>
>>
>>
>

	[[alternative HTML version deleted]]

