On Tue, Nov 23, 2010 at 7:07 AM, S T <elengss@gmail.com> wrote:

> Dear users,
>
> I am having some trouble installing the SVA package for surrogate variable
> analysis
>
> > source("http://bioconductor.org/biocLite.R")
> BioC_mirror = http://www.bioconductor.org
> Change using chooseBioCmirror().
> > biocLite("sva")
> Using R version 2.11.1, biocinstall version 2.6.9.
> Installing Bioconductor version 2.6 packages:
> [1] "sva"
> Please wait...
>
> Warning message:
> In getDependencies(pkgs, dependencies, available, lib) :
>  package ‘sva’ is not available
>
> Can anyone help?
>
>
I do not think that sva is a bioconductor package and it is not available
via CRAN.  Therefore, biocLite() won't find it.  The URL appears to be:

http://www.biostat.jhsph.edu/~jleek/sva/index.html

Sean


> Thanks very much.
>
> E.N.S
>
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