Hi All!

I am a beginner and am currently trying to formulate a BioC workflow for
some affymetrix datasets (human, rat, mouse). I have been reading about
probe remapping- have come across AffyProbeMiner, Cleaner and
GATExplorer-does anyone have experience with these? Is remapping important
even for the latest BioC versions-have the CDFs been redefined already?
(How) does it affect choices of normalization/summarization algorithms?

Thank you much...

Best,

Swapna
School of Computational & Integrative Sciences
JNU, Delhi

	[[alternative HTML version deleted]]

