Dear all,

I have a question on GeneMeta package (release 2.7).

The GeneMeta vignette shows how to obtain FDR by zScoreFDR() function, but it does not show how to obtain unadjusted p-value which is estimated from randomly permuted z-score distribution. I know that the zScoreFDR() function involves randomly permuted z-score distribution, so I think the unadjusted p-value itself should be obtained easily.

In the zScoreFDR() function, is there a variable that contains the unadjusted p-value?

Sincerely,

Seungwoo Hwang
Korean Bioinformation Center




      
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