On Thu, Oct 21, 2010 at 7:46 AM, Michael Dondrup <Michael.Dondrup@uni.no>wrote:

> Hi,
> I am trying to load package ArrayExpress, but:
>
>
>
> > biocLite("ArrayExpress")
> Using R version 2.12.0, biocinstall version 2.7.4.
> Installing Bioconductor version 2.7 packages:
> [1] "ArrayExpress"
> Please wait...
>
> trying URL '
> http://www.bioconductor.org/packages/2.7/bioc/bin/macosx/leopard/contrib/2.12/ArrayExpress_1.10.0.tgz
> '
> Content type 'application/x-gzip' length 162415 bytes (158 Kb)
> opened URL
> ==================================================
> downloaded 158 Kb
>
>
> > library(ArrayExpress)
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>  unable to load shared object
> '/Library/Frameworks/R.framework/Versions/2.12/Resources/library/preprocessCore/libs/x86_64/preprocessCore.so':
>  dlopen(/Library/Frameworks/R.framework/Versions/2.12/Resources/library/preprocessCore/libs/x86_64/preprocessCore.so,
> 6): Library not loaded:
> /Library/Frameworks/R.framework/Versions/2.11/Resources/lib/libR.dylib
>  Referenced from:
> /Library/Frameworks/R.framework/Versions/2.12/Resources/library/preprocessCore/libs/x86_64/preprocessCore.so
>  Reason: image not found
> Error: package/namespace load failed for 'ArrayExpress'
>
> This reminds me to an error reported earlier about the bioconductor MacOS
> build, but I thought that was fixed. Or is it a missing dependency?
>

Looks like your preprocessCore package is still affected by the build
problems.  You could try reinstalling preprocessCore (and potentially other
packages that were affected by the build problems) and see if that fixes
things.

Sean



>
> Best
> Michael
>
>
> > sessionInfo()
> R version 2.12.0 (2010-10-15)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] Biobase_2.10.0
>
> loaded via a namespace (and not attached):
> [1] affyio_1.18.0 limma_3.6.0   tools_2.12.0  XML_3.2-0
> >
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor@stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
>

	[[alternative HTML version deleted]]

