Thanks, Sean!


>
>From: Sean Davis <sdavis2@mail.nih.gov>
>To: "Shi, Tao" <shidaxia@yahoo.com>
>Cc: bioconductor@stat.math.ethz.ch
>Sent: Thu, October 7, 2010 4:34:55 PM
>Subject: Re: [BioC] Cy5: methylated or unmethylated?
>
>
>
>
>On Thu, Oct 7, 2010 at 7:19 PM, Shi, Tao <shidaxia@yahoo.com> wrote:
>
>Hi Sean,
>>
>>Just noticed that in your methylumi document, on page 3, where you talk about
>>the mapping.  Should Cy5 be unmethylated?
>>
>>

Hi, Tao.  On the Golden Gate assay I think Cy5 represents the methylated locus. 
 

Sean

 
...Tao
>
>
>> getAssayDataNameSubstitutions()
>regex result
>1 AVG_Beta betas
>2 Detection Pval pvals
>3 Signal CY3 unmethylated
>4 Signal CY5 methylated
>5 Signal_Red unmethylated
>6 Signal_Grn methylated
>7 Signal_A unmethylated
>8 Signal_B methylated
>
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