On Thu, Oct 7, 2010 at 7:19 PM, Shi, Tao <shidaxia@yahoo.com> wrote:

> Hi Sean,
>
> Just noticed that in your methylumi document, on page 3, where you talk
> about
> the mapping.  Should Cy5 be unmethylated?
>
>
Hi, Tao.  On the Golden Gate assay I think Cy5 represents the methylated
locus.

Sean



> ...Tao
>
>
> > getAssayDataNameSubstitutions()
> regex result
> 1 AVG_Beta betas
> 2 Detection Pval pvals
> 3 Signal CY3 unmethylated
> 4 Signal CY5 methylated
> 5 Signal_Red unmethylated
> 6 Signal_Grn methylated
> 7 Signal_A unmethylated
> 8 Signal_B methylated
>
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