On Tue, Oct 5, 2010 at 8:46 PM, Martin Morgan <mtmorgan@fhcrc.org> wrote:

> On 10/05/2010 03:07 PM, Adrian Johnson wrote:
> > Hello group,
> > I just have my fastq files from a sequencing group. what kind of
> > diagnostics one can do using bioconductor? I have a slight idea about
> > ngs but do not know where to start?
> > What kind of quality assessment tools can be applied on fastq files to
> > find if the quality of the reads are good.
> > Sorry for a very naive question, just taking baby steps.
>
> There's a brief overview at
>
>  http://bioconductor.org/help/workflows/high-throughput-sequencing/
>
> Also the updated biocViews widget at
>
>  http://bioconductor.org/help/bioc-views/release/BiocViews.html
>
> e.g., Software / AssayTechnologies / HighThroughputSequencing
>


You can go directly to a list of packages in this category with the
following link:

http://bioconductor.org/help/bioc-views/release/BiocViews.html#HighThroughputSequencing

Martin
>
>
Dan

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