Hi,
I have a data set of 3 biological repeats.
My proposed workflow for data pre-processing: background adjustment ->
normalization( lowess normalization to a median array)-> Li and Wong's
method of model-based calculation of expression index.
Any thoughts on which method of background adjustment to use (RMA; MAS;
Ideal mismatch) would be highly appreciated.
Thank you in advance.
Anjan

-- 
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anjan purkayastha, phd.
research associate
fas center for systems biology,
harvard university
52 oxford street
cambridge ma 02138
phone-703.740.6939
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