Hi Yuliang,

The mouse TSS annotation is TSS.mouse.NCBIM37. You can also get the annotation using the function getAnnotation.

You will find this information if you type in R console,
library(ChIPpeakAnno)
?annotatePeakInBatch
?getAnnotation

For detailed information on how to use the package, please refer to the paper in BMC Bioinformatics (http://www.biomedcentral.com/1471-2105/11/237) and ChIPpeakAnno practical presentation given at Bioc2010 conference (http://www.bioconductor.org/help/course-materials/2010/BioC2010/BioC2010_ChIPpeakAnno.pdf).

Kind regards,

Julie


On 9/15/10 9:42 PM, "Yuliang Tan" <yuliangtan@gmail.com> wrote:

Hi Zhu:

I'm trying to do some analysis by ChIPpeakAnno, but it seems that there are no mouse genome database in this package, could you tell me how to build an annotation file for this package?  Thank you!

	[[alternative HTML version deleted]]

