Thanks Heidi.

Do you know of any other package that would provide gene gene interactions?

take care,




________________________________
From: Heidi Dvinge <heidi@ebi.ac.uk>

Cc: bioc <bioconductor@stat.math.ethz.ch>
Sent: Sun, September 5, 2010 12:05:46 PM
Subject: Re: [BioC] int.geneint.db package installation

Hello Tim,

it looks like this package has been deprecated and is no longer available
in R 2.6.

Cheers
\Heidi

> Hi,
>
> I was trying to install the int.geneint.db package, but was getting
> errors:
>
>
>> source("http://bioconductor.org/biocLite.R")
> BioC_mirror = http://www.bioconductor.org
> Change using chooseBioCmirror().
> Warning messages:
> 1: In safeSource() : Redefining â€˜biocinstallâ€™
> 2: In safeSource() : Redefining â€˜biocinstallPkgGroupsâ€™
> 3: In safeSource() : Redefining â€˜biocinstallReposâ€™
>>     biocLite("int.geneint.db")
> Using R version 2.11.1, biocinstall version 2.6.8.
> Installing Bioconductor version 2.6 packages:
> [1] "int.geneint.db"
> Please wait...
>
> Warning in install.packages(pkgs = pkgs, repos = repos, ...) :
>   argument 'lib' is missing: using '/Users/nj/Library/R/2.11/library'
> Warning message:
> In getDependencies(pkgs, dependencies, available, lib) :
>   package â€˜int.geneint.dbâ€™ is not available
>> library("int.geneint.db")
> Error in library("int.geneint.db") :
>   there is no package called 'int.geneint.db'
>>
>
> My sessionInfo():
>
>> sessionInfo()
> R version 2.11.1 (2010-05-31)
> x86_64-apple-darwin9.8.0
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] grid      stats     graphics  grDevices utils     datasets  methods
> base
>
>
> other attached packages:
>  [1] colorRamps_2.3          org.Hs.eg.db_2.4.1
> lumiHumanIDMapping_1.6.2
>  [4] lumi_1.14.0              preprocessCore_1.10.0    mgcv_1.6-2
>  [7] affy_1.26.1              annotate_1.26.1          methylumi_1.3.3
> [10] GOstats_2.14.0           RSQLite_0.9-1            DBI_0.2-5
> [13] graph_1.26.0             Category_2.14.0
> AnnotationDbi_1.10.1
> [16] Biobase_2.8.0            biclust_0.9.1            vcd_1.2-8
> [19] colorspace_1.0-1         MASS_7.3-6               isa2_0.2.1
> [22] gplots_2.8.0             caTools_1.10             bitops_1.0-4.1
> [25] gdata_2.7.2              gtools_2.6.2             heatmap.plus_1.3
>
> loaded via a namespace (and not attached):
>  [1] affyio_1.16.0      genefilter_1.30.0  GO.db_2.4.1
> GSEABase_1.10.0
>  [5] lattice_0.18-8     Matrix_0.999375-39 nlme_3.1-96        RBGL_1.24.0
>  [9] splines_2.11.1     survival_2.35-8    tools_2.11.1       XML_3.1-0
> [13] xtable_1.5-6
>
>
>
>
>     [[alternative HTML version deleted]]
>
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