I have a set of 15 human gene st arrays that I am normalising.  From
analysis of the raw data, I can see that two of the slides are of very poor
quality (signs of rna degradation, low pearson correlations etc).  If I do
an rma normalisation and include these two slides, will they effect the
normalisation of the other slides.  In other words, is it necessary to
ignore these two slides in the rma step, or will including them make no
difference.

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