Dear all,

Could you please tell me why there is large differnce in number of
differntially expressed genes obtained from cufflinks and DESeq. I found
nearly 3000 upregulated genes at FDR 5% using cufflinks whereas just found
50 upregulated genes at 10% using DESeq. I dont have any replicates.
> Also does DESeq overcome length bias, a general problem in RNA seq data
analysis?
Regards
Aniket

	[[alternative HTML version deleted]]

