Dear all,

I'm very new to R and BioConductor, but I somehow managed to deal with my
ChIP-chip data (normalization and quality controls). The platform is
Nimblegen ChIP for E. coli K12.
My current problem is that I don't find a way to map my putative peaks to
the genome. I tried using biomaRt but its Mart ensembl only allows to access
the eukaryotic genomes. Given that there is an entry for E. coli in Ensembl,
but it is not taken into account by biomaRt, I don't know how to do this
mapping.

Do you have any ideas?

Thanks a lot in advance!

Best,
Rayna

-- 
"Change l'ordre du monde plutôt que tes désirs."

Membre du CA de l'April - Promouvoir et défendre les logiciels libres (
www.april.org)

PhD Student
"Molecular Evolution and Bioinformatics"
Ludwig-Maximilians University (LMU) of Munich



What happens when you've worked too long in the lab :
*You wonder what absolute alcohol tastes like with orange juice.
*Warning labels invoke curiosity rather than caution.
*The Christmas nightout reveals scientists can't dance, although a formula
for the movement of hands and feet combined with beats per min is found
scrawled on a napkin by a waiter the next day.
*When you have twins, you call one of them John and the other - Control.

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