dear mailing list,

I tried to read the demo FCS files from FlowJo's basic tutorial (
http://www.flowjo.com/home/tutorial.html) using the read.FCS function, but I
always get the following error message:

> Test <- read.FCS( "Sample 2.fcs" )
Error in readFCSdata(con, offsets, txt, transformation, which.lines, scale,
 :
  Don't know how to deal with bitwidth 9


I would be grateful for any suggestions, or some hints whether this is a
problem in the function, or of the data files.

bests, jo

my sessionInfo:

> sessionInfo()
R version 2.11.1 (2010-05-31)
i386-apple-darwin9.8.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
[1] flowCore_1.14.1    rrcov_1.0-01       pcaPP_1.8-1        mvtnorm_0.9-92

[5] robustbase_0.5-0-1 Biobase_2.8.0

loaded via a namespace (and not attached):
[1] feature_1.2.4 graph_1.26.0  ks_1.6.13     MASS_7.3-6    stats4_2.11.1



-- 
Johannes Rainer, PhD
Applied Bioinformatics Group,
Division Molecular Pathophysiology,
Biocenter, Medical University Innsbruck,
Fritz-Pregl-Str 3/IV, 6020 Innsbruck, Austria
and
Tyrolean Cancer Research Institute
Innrain 66, 6020 Innsbruck, Austria

Tel.:     +43 512 570485 13
Email:  johannes.rainer@i-med.ac.at
            johannes.rainer@tcri.at
URL:   http://bioinfo.i-med.ac.at

	[[alternative HTML version deleted]]

