Hi Yuan,

You always have the option to do things a little more hands on and use
makeTranscriptDb() instead of makeTranscriptDbFromUCSC().

There is a manual page for it that gives details:

?makeTranscriptDb


  Marc


On 08/12/2010 05:50 AM, Yuan Jian wrote:
> Hi,
> wgRna is not support by makeTranscriptDbFromUCSC. is there other way to create SQLite file?
>  
>   
>> hg18_wgRna <-makeTranscriptDbFromUCSC(genome = "hg18",tablename = "wgRna")
>>     
> Error in makeTranscriptDbFromUCSC(genome = "hg18", tablename = "wgRna") : 
>   table "wgRna" is not supported
>
> thanks
> YU
>  
>
>
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