I can't imagine why xmapcore would provide that, but why not use Biostrings
and BSgenome.Hsapiens.UCSC.[your favorite version]?

On Wed, Jul 28, 2010 at 6:25 AM, Stephen Taylor <stephen.taylor@imm.ox.ac.uk
> wrote:

> Hi,
>
> Is there a method in xmapcore to get part of the sequence of the adjoining
> intron given an exon id?
>
> For example:
>
> > exon.details("ENSE00001146308")
> RangedData with 1 row and 5 value columns across 1 space
>        space             ranges |       stable_id    strand     phase
>  <character>          <IRanges> |     <character> <integer> <integer>
> 1          17 [7590695, 7590856] | ENSE00001146308        -1        -1
>  end_phase
>  <integer>
> 1        -1
>
>                                     sequence
>
>                                  <character>
> 1
> GTTTTCCCCTCCCATGTGCTCAAGACTGGCGCTAAAAGTTTTGAGCTTCTCAAAAGTCTAGAGCCACCGTCCAGGGAGCAGGTAGCTGCTGGGCTCCGGGGACACTTTGCGTTCGGGCTGGGAGCGTGCTTTCCACGACGGTGACACGCTTCCCTGGATTGG
>
>
> I'd like to get chr17:7590695-7590863
>
> Thanks,
>
> Steve
>
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