Hello bioconductor community, this is my first post so please excuse me if i
make any protocol mistake, also please note that english is not my native
language.

I'm trying to install the package GeneR (
http://bioconductor.org/packages/release/bioc/html/GeneR.html)
but for some reason i can't complete the compilation process.

Im currently using Archlinux, R 2.11 , gcc 4.5 and the stable release of
Bioconductor (2.6).

Here is what i'm doing (i have already installed other packages without
problem)

sudo R
> source("http://bioconductor.org/biocLite.R")
> biocLite("GeneR")

and here is the output:

...
* installing *source* package ‘GeneR’ ...
** libs
g++ -I/usr/include/R/  -I/usr/local/include    -fpic  -march=i686
-mtune=generic -O2 -pipe -c GeneR_glob.cc -o GeneR_glob.o
g++ -I/usr/include/R/  -I/usr/local/include    -fpic  -march=i686
-mtune=generic -O2 -pipe -c GeneR_seq.cc -o GeneR_seq.o
g++ -I/usr/include/R/  -I/usr/local/include    -fpic  -march=i686
-mtune=generic -O2 -pipe -c complementaire.cc -o complementaire.o
g++ -I/usr/include/R/  -I/usr/local/include    -fpic  -march=i686
-mtune=generic -O2 -pipe -c compoSeq.cc -o compoSeq.o
compoSeq.cc: En la función ‘void sys_exactmatch(int*, char**, int*, int*,
int*, int*, int*, int*, int*, int*, int*, int*)’:
compoSeq.cc:77:9: error: no hay coincidencias al convertir la función
‘strstr’ al tipo ‘char* (*)(const char*, const char*)’
/usr/include/string.h:329:1: error: los candidatos son: char* strstr(char*,
const char*)
/usr/include/string.h:335:1: error:                     const char*
strstr(const char*, const char*)
compoSeq.cc:81:11: error: no hay coincidencias al convertir la función
‘strcasestr’ al tipo ‘char* (*)(const char*, const char*)’
/usr/include/string.h:367:20: error: los candidatos son: char*
strcasestr(char*, const char*)
/usr/include/string.h:369:28: error:                     const char*
strcasestr(const char*, const char*)
make: *** [compoSeq.o] Error 1
ERROR: compilation failed for package ‘GeneR’
* removing ‘/usr/lib/R/library/GeneR’
...

any help is much appreciated, as i'm needing this for my master thesis work,
thanks!

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