Hi Heidi,

I should have been more clear. I am using RNA seq to quantify rna levels in
mice. I will use the DESeq package to compare these levels but I think my
experiment has identified novel transcripts. I would like to know if they
are really novel, hence my question. This question should be of interest to
others encountering the same problem.

On Mon, Jun 28, 2010 at 11:50 PM, Heidi Dvinge <heidi@ebi.ac.uk> wrote:

> Dear anonymous,
>
> what does this have to do with Bioconductor?
>
> Cheers
> \Heidi
>
>
> On 29 Jun 2010, at 04:11, rna seq wrote:
>
>  Hello Bioconductor,
>>
>> I am searching for a comprehensive list of coordinates for the mouse
>> transcriptome. So far I have Mouse Reference Transcriptome Database
>> http://www.genome.gov/13014330 and Tromer
>> http://www.isrec.isb-sib.ch/tromer/.
>>
>> Thanks
>>
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>>
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>
>

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