Hi, Aric,

I moved the conversation here because other people might be benefit from
it. 

Similar to rangeGate() and quandrantGate(), an extra argument 'plot' is
added to lymphGate() to produce plots of filter results.   This update
is included in flowStats V 1.7.4 in the Bioc-devel branch.

-------- Original Message --------
Subject: 	Re: flowStats update ?lymphGate Issue
Date: 	Wed, 16 Jun 2010 11:09:44 -0700
From: 	Chao-Jen Wong <cwon2@fhcrc.org>
Organization: 	Fred Hutchinson Cancer Research Center
To: 	Aric Gregson <a.gregson@ucla.edu>



Airc,

That's a good suggestion. We thought using 'xyplot' (e.g.,
xyplot(`SSC-H`~`FSC-H`, dat, filter=lg$n2gate)) would be easy for the
user to see the evaluation prior to adding the gate to a workflow. But
since both rangeGate, quandrantGate have an option to plot the
evaluation, it is a good idea to keep it consistent and let lymphGate to
plot the evaluation automatically.  I will let you know when it is done.

Thanks,
Chao-Jen

On 06/15/10 17:42, Aric Gregson wrote:
> Chao-Jen,
>
> Moving through this, I think I am having some trouble with lymphGate 
> function. It is evaluating, but it never plots the evaluation. It is very 
> helpful, as with the rangeGate, to see the results and perhaps alter them 
> prior to adding to a workFlow.
>
> aric
>   


-- 
Chao-Jen Wong
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Avenue N., M1-B514
PO Box 19024
Seattle, WA 98109
206.667.4485
cwon2@fhcrc.org



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