dear List,

I am trying to install the package girafe from bioconductor but I have been
unsuccessful. I first tried via biocLite but I am getting the error :
package not available (see pasted message bellow) and then I have tried to
install from source. I have downloaded the tar.gz file and
 biocLite("girafe") I am getting another error:

Creating a new generic function for "plot" in "girafe"
Warning in omitted & is.na(match(signature[omitted], c("ANY", "missing"))) :
  longer object length is not a multiple of shorter object length
Error in conformMethod(signature, mnames, fnames, f, fdef, definition) :
  In method for function "coverage": formal arguments omitted in the method
definition cannot be in the signature (start = "NA", end = "NA")
Error : unable to load R code in package 'girafe'
ERROR: lazy loading failed for package ‘girafe’
* removing ‘/usr/local/lib/R/site-library/girafe’
Warning message:
In install.packages("girafe_1.0.0.tar.gz") :
  installation of package 'girafe_1.0.0.tar.gz' had non-zero exit status

thanks in advance for your help. Information about session info is in the
end of this message
With kind regards,
Andreia

error message from biocLite("girafe"):
-----------------------------------------------------------------------------
Using R version 2.10.1, biocinstall version 2.5.10.
Installing Bioconductor version 2.5 packages:
[1] "girafe"
Please wait...

Warning in install.packages(pkgs = pkgs, repos = repos, ...) :
  argument 'lib' is missing: using '/usr/local/lib/R/site-library'
Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
  package ‘girafe’ is not available


sessionInfo:

 sessionInfo()
R version 2.10.1 (2009-12-14)
x86_64-pc-linux-gnu

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] tools_2.10.1






-- 
--------------------------------------------
Andreia J. Amaral
Unidade de Imunologia Clínica
Instituto de Medicina Molecular
Universidade de Lisboa
email: andreiaamaral@fm.ul.pt
         andreia.fonseca@gmail.com

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