Hi Mervi. 

As I stated before, I believe this should work.  You will have to plot
it like this though because the chip type does not have a ".db"
extension.  Only the annotation package has that.

library("lumiHumanAll.db")
KEGG2heatmap("04810", test, "lumiHumanAll")

If you try this and it doesn't work just let us know.


  Marc



On 06/14/2010 05:45 AM, Alanne, Mervi wrote:
> Dear all,
>
> Is it possible to plot expression data from Illumina HT-12 with GO2heatmap or KEGG2heatmap functions? I'm using lumi package for normalizing and transforming the data and I understand that the lumi batch objects have the same structure as eSet. However when I try to use the function on lumi object with lumiHumanAll.db annotation I get error messages saying that " object 'lumiHumanAll.dbPATH2PROBE' not found". Apperantly PATH2PROBE is missing from the lumi object ?
>
>   
>> library("lumiHumanAll.db")
>> KEGG2heatmap("04810", test, "lumiHumanAll.db")
>>     
> -Mervi
> Dr. Mervi Kinnunen (née Alanne)
> Postdoctoral fellow
> Wihuri Research Institute
> Finland
>
>
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>
>
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