Hi, Chris.  You might get a better answer by writing to the GSEA authors.
 I'm assuming here that the code you are talking about is not part of a
bioconductor package.

Sean

On Thu, Jun 3, 2010 at 7:13 AM, Chris Fenton <chrisf@fagmed.uit.no> wrote:

>
> > source('basicGSEA.R')
> 'envir' chosen:<environment: R_GlobalEnv>
> encoding = "native.enc" chosen
> Error: '\%' is an unrecognized escape in character string starting "Tag
> \%"
>
> > sessionInfo()
> R version 2.11.0 (2010-04-22)
> i386-pc-mingw32
>
> locale:
> [1] LC_COLLATE=Norwegian (Bokmål)_Norway.1252  LC_CTYPE=Norwegian
> (Bokmål)_Norway.1252    LC_MONETARY=Norwegian (Bokmål)_Norway.1252
> LC_NUMERIC=C
> [5] LC_TIME=Norwegian (Bokmål)_Norway.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] limma_3.4.1
>
>
> Strange never had a problem with GSEA.1.0.R before.
> Typical though, right before an R introductory course in microarray
> analysis it crashes. Works fine on my ubuntu machine, I guess it is the
> Windows XP machines in the PC lab that are mixing things up. Anyone come
> across this error ?
>
>
> Chris
>
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