Hi everyone i did a GO enrichment analysis using GOstat package for around
112 genes and got 80 go terms enriched in BP ontology ... but the results
are not showing what are the genes that are associated with a particular GO
term ... command used are as followd

library("hgu133plus2.db")
allg <- get("hgu133plus2ENTREZID")
allg <- as.data.frame(unlist(as.list(allg)))
entrez.ids <- unique(allg[rownames(dat.s),])

params <- new("GOHyperGParams", geneIds=entrez.ids,
annotation=c("hgu133plus2"), ontology="BP", pvalueCutoff=0.05,
conditional=FALSE, testDirection="over")
resultBP<-hyperGTest(params)

please help to find out the genes associated with the go terms

Rohit
-- 
Rohit Farmer
M.Tech Bioinformatics
Department of Computational Biology and Bioinformatics
Jacob School of Biengineering and Biotechnology
Sam Higginbottom Institute of Agriculture, Technology and Sciences
(Formerly known as Allahabad Agricultural Institute - Deemed University)
Allahabad, UP, INDIA - 211 007
Ph. No. 9839845093, 9415261403
e-Mail rohit.farmer@gmail.com
Blog http://rohitsspace.blogspot.com

	[[alternative HTML version deleted]]

